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This change fixes the setting of $PATH for pyenv and its shims, while warning
the user about non-interactive shells.
Co-authored-by: Marc Cornellà <hello@mcornella.com>

Co-authored-by: Ziga Sebenik <ziga.sebenik@oryxgaming.com>

Co-authored-by: Robert Lankford <robert.lankford@nuorder.com>

This patch removes the 'exit 1' status code when the update check
finishes or is ended with CTRL+C.

Fixes #10033

Without this fix the confirmation prompt appears wherever the cursor is,
which means that it might appear in the command line when using a widget
that changes the directory without redrawing the prompt (an example of
this are the dircycle and dirhistory plugins).

Fixes #9974

This reverts commit a2062714.

Changed commands:
gcd: uses gitflow.branch.develop to get user-set development branch
gch: uses gitflow.prefix.hotfix to get user-set hotfix prefix
gcr: uses gitflow.prefix.release to get user-set release prefix
Co-authored-by: Fabio 'c0m3tx' Vitale <c0m3tx@gmail.com>

I thought it would be useful to add these aliases. 

There are already aliases for `git commit -S` and `git commit -s` but there is none for both simultaneously =)

* Add pm2 plugin

* Add description of pm2 plugin

* speed up mercurial plugin

* removed unnecesay limit to current dir from hg status

* Add customizable list of command that triggers lazy loading

* Add $NVM_LAZY_CMD

* Add instruction to `NVM_LAZY_CMD` in README.md

* feat(plugins): add alias for pip commands

* feat(plugins): updated README.md and add alias

* allow for customization of RPROMPT (exit code and timestamp)

* improve code and comments

Co-authored-by: Marc Cornellà <marc.cornella@live.com>
Co-authored-by: Robby Russell <robby@planetargon.com>

* Add Ag completion

A replacement for ack/grep https://github.com/ggreer/the_silver_searcher

* Create README.md

As requested in the PR: https://github.com/ohmyzsh/ohmyzsh/pull/3534

* Add first impl of samtools autocompletion

* Just autocomplete with files all the time

* Add init impl of bedtools completion

* Add readme.md for bedtools plugin

* Add readme for samtools
Co-authored-by: Rolf Schroeder <rolf.schroeder@centogene.com>

* Switch order of "apt" and "aptitude" for detection

"apt" is installed by default at Debian (maybe Ubuntu too), while "aptitude" does not seem to be installed by default.
For that, it may be better for most of the users to prefer "aptitude" if installed.

* plugins/debian/README: Change of order mirroded into documentation

Add a new function to get the current mercurial bookmark which can be
used in the theme prompts for example.

Add an alias for ```showpkg``` to get the reverse and recursive dependencies on a package

* add isodate plugin

Download, extract, and cd into the resulting directory.
Co-authored-by: Mitchel Humpherys <mitchelh@codeaurora.org>

* Test only for the presence of a .git directory in virtualenvwrapper

Instead of using both $(git rev-parse --show-toplevel) and a check for
a .git directory, use just the latter. As well as being redundant
the former does not work quite so well when using multiple worktrees;
each worktree will be treated as a separate project.

* Unset ENV_NAME & deactivate if no virtualenv found

This addresses #4603 without breaking current behaviour (where current
behaviour is correct).

When changing directories, if there is no environment matching
ENV_NAME, ENV_NAME is emptied and deactivate called if there is a
current environment active (based on CD_VIRTUAL_ENV).

* Use path comparison not string comparison for paths

This will solve part of issue #4255 where WORKON_HOME is defined with a
trailing slash or not normalised in some way, as well as instances
where symlinks are used, and any other instances where constructed
paths don't exactly match even though they go to the same file.
Co-authored-by: Robby Russell <robby@planetargon.com>